picsFDR: Estimate the FDR

In PICS: Probabilistic inference of ChIP-seq

Description

Estimate the false detection rate for an object of class pics or picsList.

Usage

picsFDR(
  picsIP,
  picsCont,
  filter = list(delta = c(0, Inf), se = c(0, Inf), sigmaSqF = c(0, Inf), sigmaSqR = c(0,
    Inf))
)

Arguments

picsIP	An object of class pics or picsList containing the informations for the IP reads.
picsCont	An object of class pics or picsList containing the informations for the control reads
filter	A list of ranges for filtering regions based on PICS parameters. By default filter is set to NULL and all regions are used. delta: Length of the binding sites se: Standard error sigmaSqF: Forward peak variance sigmaSqR: Reverse peak variance

Value

A data.frame with the following columns: FDR, score, N

See Also

picsList pics

PICS documentation built on Nov. 8, 2020, 8:21 p.m.