pics-generics: Generics associated with pics classes

In PICS: Probabilistic inference of ChIP-seq

Description

These generics are used in methods of pics, picsError and picsList classes. See class help pages for method documentation.

Usage

minRange(x, ...)

maxRange(x, ...)

score(x, ...)

scoreReverse(x, ...)

scoreForward(x, ...)

chromosome(x, ...)

se(x, ...)

seF(x, ...)

seR(x, ...)

sigmaSqF(x, ...)

sigmaSqR(x, ...)

delta(x, ...)

mu(x, ...)

w(x, ...)

K(x, ...)

code(x, ...)

## S4 method for signature 'data.frame'
score(x)

## S4 method for signature 'data.frame'
scoreReverse(x)

## S4 method for signature 'data.frame'
scoreForward(x)

## S4 method for signature 'data.frame'
chromosome(x)

## S4 method for signature 'data.frame'
se(x)

## S4 method for signature 'data.frame'
seF(x)

## S4 method for signature 'data.frame'
seR(x)

## S4 method for signature 'data.frame'
sigmaSqF(x)

## S4 method for signature 'data.frame'
sigmaSqR(x)

## S4 method for signature 'data.frame'
delta(x)

## S4 method for signature 'data.frame'
mu(x)

Arguments

x, ...

Object and argumemts passed to the methods.

Functions

• minRange: Start accessor

• maxRange: End accessor

• score: Score accessor

• scoreReverse: Reverse score accessor

• scoreForward: Forward score accesor

• chromosome: Chromosome accessor

• se: se accessor

• seF: Forward se accessor

• seR: Reverse se accessor

• sigmaSqF: sigmaSqF accessor

• sigmaSqR: sigmaSqR accessor

• delta: delta accessor

• mu: mu accessor

• w: w accessor

• K: K accessor

• code: Return error codes

• score,data.frame-method: Score accessor

• scoreReverse,data.frame-method: Reverse score accessor

• scoreForward,data.frame-method: Forward score accessorse

• chromosome,data.frame-method: chromosome accessor

• se,data.frame-method: se accessor

• seF,data.frame-method: seF accessor

• seR,data.frame-method: seR accessor

• sigmaSqF,data.frame-method: sigmaSqF accessor

• sigmaSqR,data.frame-method: sigmaSqR accessor

• delta,data.frame-method: delta accessor

• mu,data.frame-method: mu accessor

PICS documentation built on Nov. 8, 2020, 8:21 p.m.