picsList-class: List of PICS objects

In PICS: Probabilistic inference of ChIP-seq

Description

List of PICS objects

Usage

## S4 method for signature 'picsList'
show(object)

## S4 method for signature 'picsList'
minRange(x)

## S4 method for signature 'picsList'
maxRange(x)

## S4 method for signature 'picsList'
score(x)

## S4 method for signature 'picsList'
scoreReverse(x)

## S4 method for signature 'picsList'
scoreForward(x)

## S4 method for signature 'picsList'
chromosome(x)

## S4 method for signature 'picsList'
se(x)

## S4 method for signature 'picsList'
seF(x)

## S4 method for signature 'picsList'
seR(x)

## S4 method for signature 'picsList'
sigmaSqF(x)

## S4 method for signature 'picsList'
sigmaSqR(x)

## S4 method for signature 'picsList'
delta(x)

## S4 method for signature 'picsList'
mu(x)

## S4 method for signature 'picsList'
w(x)

## S4 method for signature 'picsList'
K(x)

## S4 method for signature 'picsList'
code(x)

## S4 method for signature 'picsList'
length(x)

## S4 method for signature 'picsList'
summary(object)

## S4 method for signature 'picsList,ANY,ANY,ANY'
x[i, j, ..., drop = FALSE]

## S4 method for signature 'picsList,ANY,ANY'
x[[i, j, ..., exact = TRUE]]

Arguments

object, x	A pics object.
i, j, ..., drop, exact	Arguments passed to subset functions

Functions

• show,picsList-method: show method

• minRange,picsList-method: Get start of range

• maxRange,picsList-method: Get end of range

• score,picsList-method: Score accessor.

• scoreReverse,picsList-method: Reverse score accessor.

• scoreForward,picsList-method: Forward score accessor.

• chromosome,picsList-method: Chromosome accessor

• se,picsList-method: se accessor

• seF,picsList-method: Forward se accessor

• seR,picsList-method: Reverse se accessor

• sigmaSqF,picsList-method: sigmaSqF accessor

• sigmaSqR,picsList-method: sigmaSqR accessor

• delta,picsList-method: delta accessor

• mu,picsList-method: mu accessor

• w,picsList-method: w accessor

• K,picsList-method: K accessor

• code,picsList-method: Error code accessor

• length,picsList-method: Return the length of the object

• summary,picsList-method: Summary of the object

• [,picsList,ANY,ANY,ANY-method: Subset list

• [[,picsList,ANY,ANY-method: Subset element

PICS documentation built on Nov. 8, 2020, 8:21 p.m.