API for PICS
Probabilistic inference of ChIP-seq

Global functions
.cand_recursive	Source code
.filterPICS	Source code
.filterPICS2	Source code
.fitModelAllkSplit	Source code
.formatCInput	Source code
K	Man page
K,pics-method	Man page
K,picsError-method	Man page
K,picsList-method	Man page
PICS	Man page Source code
[,picsList,ANY,ANY,ANY-method	Man page
[,segReadsList,ANY,ANY,ANY-method	Man page
[,segReadsListPE,ANY,ANY,ANY-method	Man page
[[,picsList,ANY,ANY-method	Man page
[[,segReadsList,ANY,ANY-method	Man page
[[,segReadsListPE,ANY,ANY-method	Man page
backgroundSim	Source code
bam2gr	Man page Source code
candidate.region	Man page Source code
chromosome	Man page
chromosome,data.frame-method	Man page
chromosome,pics-method	Man page
chromosome,picsError-method	Man page
chromosome,picsList-method	Man page
code	Man page
code,pics-method	Man page
code,picsError-method	Man page
code,picsList-method	Man page
delta	Man page
delta,data.frame-method	Man page
delta,pics-method	Man page
delta,picsError-method	Man page
delta,picsList-method	Man page
length,picsList-method	Man page
length,segReadsList-method	Man page
makeGRangesOutput	Man page Source code
map	Man page
map,segReads-method	Man page
map,segReadsList-method	Man page
maxRange	Man page
maxRange,pics-method	Man page
maxRange,picsError-method	Man page
maxRange,picsList-method	Man page
minRange	Man page
minRange,pics-method	Man page
minRange,picsError-method	Man page
minRange,picsList-method	Man page
mu	Man page
mu,data.frame-method	Man page
mu,pics-method	Man page
mu,picsError-method	Man page
mu,picsList-method	Man page
newPics	Source code
newPicsError	Source code
newPicsList	Source code
pics-class	Man page
pics-generics	Man page
picsError-class	Man page
picsFDR	Man page Source code
picsList-class	Man page
plot,pics,segReads-method	Man page
plot,picsError,segReads-method	Man page
plot,picsList,picsList-method	Man page
plot,picsList,segReadsList-method	Man page
plot-FDR	Man page
plot-pics	Man page
s_cut	Source code
score	Man page
score,data.frame-method	Man page
score,pics-method	Man page
score,picsError-method	Man page
score,picsList-method	Man page
scoreForward	Man page
scoreForward,data.frame-method	Man page
scoreForward,pics-method	Man page
scoreForward,picsError-method	Man page
scoreForward,picsList-method	Man page
scoreReverse	Man page
scoreReverse,data.frame-method	Man page
scoreReverse,pics-method	Man page
scoreReverse,picsError-method	Man page
scoreReverse,picsList-method	Man page
se	Man page
se,data.frame-method	Man page
se,pics-method	Man page
se,picsError-method	Man page
se,picsList-method	Man page
seF	Man page
seF,data.frame-method	Man page
seF,pics-method	Man page
seF,picsError-method	Man page
seF,picsList-method	Man page
seR	Man page
seR,data.frame-method	Man page
seR,pics-method	Man page
seR,picsError-method	Man page
seR,picsList-method	Man page
segChrRead	Man page Source code
segReads	Man page Source code
segReads-class	Man page
segReadsGeneric	Man page Source code
segReadsList	Man page Source code
segReadsList-class	Man page
segReadsListPE	Man page Source code
segReadsListPE-class	Man page
segReadsPE	Man page Source code
segReadsPE-class	Man page
segmentPICS	Man page Source code
setParaEM	Man page Source code
setParaPrior	Man page Source code
show,pics-method	Man page
show,picsError-method	Man page
show,picsList-method	Man page
show,segReads-method	Man page
show,segReadsList-method	Man page
sigmaSqF	Man page
sigmaSqF,data.frame-method	Man page
sigmaSqF,pics-method	Man page
sigmaSqF,picsError-method	Man page
sigmaSqF,picsList-method	Man page
sigmaSqR	Man page
sigmaSqR,data.frame-method	Man page
sigmaSqR,pics-method	Man page
sigmaSqR,picsError-method	Man page
sigmaSqR,picsList-method	Man page
summary,pics-method	Man page
summary,picsList-method	Man page
summary,segReads-method	Man page
summary,segReadsList-method	Man page
summarySeg	Man page Source code
w	Man page
w,pics-method	Man page
w,picsError-method	Man page
w,picsList-method	Man page