bam2gr | Pre-process bam files |
candidate.region | Identify candidate regions |
makeGRangesOutput | Export a PICS object to GRanges |
PICS | Estimation of binding site positions |
pics-class | PICS class |
picsError-class | picsError class |
picsFDR | Estimate the FDR |
pics-generics | Generics associated with pics classes |
picsList-class | List of PICS objects |
plot-FDR | Plot PICS FDR |
plot-pics | Plot methods for PICS objects |
segChrRead | Segmentation of paired-end sequencing data |
segmentPICS | Segment the genome into candidate regions |
segReads-class | Classes and functions to segment the genome in candidate... |
segReadsGeneric | Perform genome segmentation depending |
segReadsListPE-class | Class and methods for list of candidate regions from... |
segReadsPE-class | Classe and methods for candidate regions from paired-end data |
setParaEM | List of parameters for the EM algorithm that can be used as... |
setParaPrior | List of parameters that can be used as an argument of PICS. |
summarySeg | Summarize segmentList objects |
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