In Cytoscape, remove all selected edges. These edges will still exist in the corresponding R graph until you delete them there as well.
selectEdges cy2.edge.names deleteSelectedNodes
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cw <- new.CytoscapeWindow ('deleteSelectedEdges.test', graph=makeSimpleGraph()) displayGraph (cw) redraw (cw) layoutNetwork(cw, 'jgraph-spring') print (cy2.edge.names (cw@graph)) # find out Cytoscape's names for these edges selectEdges (cw, "B (synthetic lethal) C") deleteSelectedEdges (cw) redraw (cw)
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