displayGraph: displayGraph
In RCytoscape: Display and manipulate graphs in Cytoscape
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This method transmits the CytoscapeWindowClass's graph data, from R to
Cytoscape: nodes, edges, node and edge attributes, and displays it in a
window titled as specified by the objects 'title' slot. With large
graphs, this transmission may take a while. (todo: provide a few
timing examples.) The resulting view, in Cytoscape, of the network will
need layout and vizmap rendering; layout so that all the nodes and edges
can be seen; rendering so that data attributes can control the
appearance of the the nodes and edges.
Usage
1
displayGraph(obj)
Arguments
obj
a CytoscapeWindowClass object.
Value
Nothing.
Author(s)
Paul Shannon
Examples
1
2
3
4
cw <- CytoscapeWindow ('displayGraph.test', graph=makeSimpleGraph())
displayGraph (cw)
layoutNetwork(cw, 'jgraph-spring')
redraw (cw)
RCytoscape documentation built on Nov. 17, 2017, 10:52 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
This method transmits the CytoscapeWindowClass's graph data, from R to Cytoscape: nodes, edges, node and edge attributes, and displays it in a window titled as specified by the objects 'title' slot. With large graphs, this transmission may take a while. (todo: provide a few timing examples.) The resulting view, in Cytoscape, of the network will need layout and vizmap rendering; layout so that all the nodes and edges can be seen; rendering so that data attributes can control the appearance of the the nodes and edges.
Usage
1 | displayGraph(obj)
|
Arguments
obj |
a |
Value
Nothing.
Author(s)
Paul Shannon
Examples
1 2 3 4 | cw <- CytoscapeWindow ('displayGraph.test', graph=makeSimpleGraph())
displayGraph (cw)
layoutNetwork(cw, 'jgraph-spring')
redraw (cw)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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