displayGraph: displayGraph

Description Usage Arguments Value Author(s) Examples

Description

This method transmits the CytoscapeWindowClass's graph data, from R to Cytoscape: nodes, edges, node and edge attributes, and displays it in a window titled as specified by the objects 'title' slot. With large graphs, this transmission may take a while. (todo: provide a few timing examples.) The resulting view, in Cytoscape, of the network will need layout and vizmap rendering; layout so that all the nodes and edges can be seen; rendering so that data attributes can control the appearance of the the nodes and edges.

Usage

1

Arguments

obj

a CytoscapeWindowClass object.

Value

Nothing.

Author(s)

Paul Shannon

Examples

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  cw <- CytoscapeWindow ('displayGraph.test', graph=makeSimpleGraph())
  displayGraph (cw)
  layoutNetwork(cw, 'jgraph-spring')
  redraw (cw)

RCytoscape documentation built on May 31, 2017, 2:04 p.m.