getLayoutNameMapping: getLayoutNameMapping
In RCytoscape: Display and manipulate graphs in Cytoscape

Description Usage Arguments Value Author(s) See Also Examples

The Cytoscape 'Layout' menu lists many layout algorithms, but the names presented there are different from the names by which these algorithms are known to layout method. This method returns a named list in which the names are from the GUI, and the values identify the names you must use to choose an algorithms in the programmatic interface.

1	getLayoutNameMapping(obj)

obj

a CytoscapeConnectionClass object.

A named list of strings.

Paul Shannon

layout getLayoutNames getLayoutPropertyNames getLayoutPropertyType getLayoutPropertyValue setLayoutProperties

  cy <- CytoscapeConnection ()
  layout.name.map <- getLayoutNameMapping (cy)
  print (head (names (layout.name.map), n=3))
    # [1] "Inverted Self-Organizing Map Layout" "Group Attributes Layout" "MOEN Layout"
  print (head (as.character (layout.name.map), n=3))
    # [1] "isom"   "attributes-layout"   "jgraph-moen"