Files in RCytoscape
Display and manipulate graphs in Cytoscape
NAMESPACE
NEWS
DESCRIPTION
.BBSoptions
README
tests/RCytoscape_unit_tests.R
build/vignette.rds
R/RCytoscape.R
R/test_RCytoscape_package.R
R/validCytoscapeWindow.R
man/setNodeHeightDirect.Rd
man/setCenter.Rd
man/getNodePosition.Rd
man/getAdjacentEdgeNames.Rd
man/invertEdgeSelection.Rd
man/getDefaultNodeSelectionColor.Rd
man/setNodeBorderColorRule.Rd
man/selectFirstNeighborsOfSelectedNodes.Rd
man/getEdgeCount.Rd
man/setEdgeLabelRule.Rd
man/raiseWindow.Rd
man/getNodeSize.Rd
man/restoreLayout.Rd
man/deleteSelectedEdges.Rd
man/getAttributeClassNames.Rd
man/existing.CytoscapeWindow.Rd
man/setEdgeLineWidthRule.Rd
man/getFirstNeighbors.Rd
man/getDefaultEdgeSelectionColor.Rd
man/setEdgeTargetArrowShapeDirect.Rd
man/getSelectedEdges.Rd
man/setTooltipDismissDelay.Rd
man/setNodeColorDirect.Rd
man/setEdgeLabelDirect.Rd
man/getDefaultEdgeReverseSelectionColor.Rd
man/setDefaultNodeLabelColor.Rd
man/getWindowID.Rd
man/copyVisualStyle.Rd
man/setZoom.Rd
man/redraw.Rd
man/dockPanel.Rd
man/setNodeWidthDirect.Rd
man/setDefaultNodeSize.Rd
man/hideAllPanels.Rd
man/setEdgeTargetArrowRule.Rd
man/setVisualStyle.Rd
man/getEdgeAttribute.Rd
man/deleteSelectedNodes.Rd
man/createWindow.Rd
man/setDefaultNodeShape.Rd
man/setNodeShapeDirect.Rd
man/makeSimpleGraph.Rd
man/getSelectedNodes.Rd
man/setEdgeColorRule.Rd
man/deleteEdgeAttribute.Rd
man/addCyEdge.Rd
man/pluginVersion.Rd
man/setEdgeTargetArrowColorDirect.Rd
man/showGraphicsDetails.Rd
man/CytoscapeWindowClass-class.Rd
man/setNodeFontSizeDirect.Rd
man/setDefaultEdgeSelectionColor.Rd
man/CytoscapeWindow.Rd
man/setNodeTooltipRule.Rd
man/getViewCoordinates.Rd
man/getArrowShapes.Rd
man/fitSelectedContent.Rd
man/displayGraph.Rd
man/lockNodeDimensions.Rd
man/setEdgeTooltipDirect.Rd
man/getNodeShapes.Rd
man/setNodeBorderOpacityDirect.Rd
man/getSelectedEdgeCount.Rd
man/deleteWindow.Rd
man/setGraph.Rd
man/new.CytoscapeWindow.Rd
man/msg.Rd
man/setNodeShapeRule.Rd
man/setEdgeLabelOpacityDirect.Rd
man/setDefaultNodeSelectionColor.Rd
man/setEdgeOpacityRule.Rd
man/setEdgeLineWidthDirect.Rd
man/getDirectlyModifiableVisualProperties.Rd
man/setEdgeFontSizeDirect.Rd
man/initNodeAttribute.Rd
man/getDefaultBackgroundColor.Rd
man/deleteAllWindows.Rd
man/setDefaultNodeBorderWidth.Rd
man/setNodeSizeRule.Rd
man/setEdgeOpacityDirect.Rd
man/setNodeOpacityDirect.Rd
man/getLayoutNameMapping.Rd
man/getCenter.Rd
man/setDefaultEdgeColor.Rd
man/clearSelection.Rd
man/setDefaultNodeReverseSelectionColor.Rd
man/getGraphFromCyWindow.Rd
man/getLayoutPropertyValue.Rd
man/setEdgeTargetArrowOpacityDirect.Rd
man/setEdgeSourceArrowColorRule.Rd
man/makeRandomGraph.Rd
man/addGraphToGraph.Rd
man/predictTimeToDisplayGraph.Rd
man/getWindowList.Rd
man/floatPanel.Rd
man/setEdgeLineStyleRule.Rd
man/setNodeLabelColorDirect.Rd
man/getLayoutPropertyNames.Rd
man/getNodeAttribute.Rd
man/selectNodes.Rd
man/setEdgeLabelColorDirect.Rd
man/sendEdges.Rd
man/getLayoutNames.Rd
man/eda.Rd
man/getAllEdges.Rd
man/deleteNodeAttribute.Rd
man/setNodePosition.Rd
man/setDefaultBackgroundColor.Rd
man/setNodeColorRule.Rd
man/setNodeBorderWidthDirect.Rd
man/unhideAll.Rd
man/setLayoutProperties.Rd
man/setNodeBorderColorDirect.Rd
man/ping.Rd
man/noa.Rd
man/getAllEdgeAttributes.Rd
man/setNodeLabelRule.Rd
man/fitContent.Rd
man/setWindowSize.Rd
man/eda.names.Rd
man/getZoom.Rd
man/selectEdges.Rd
man/sendNodes.Rd
man/saveImage.Rd
man/createWindowFromSelection.Rd
man/setNodeSizeDirect.Rd
man/invertNodeSelection.Rd
man/addCyNode.Rd
man/setEdgeAttributesDirect.Rd
man/setDefaultEdgeFontSize.Rd
man/setNodeLabelDirect.Rd
man/setNodeImageDirect.Rd
man/setNodeAttributesDirect.Rd
man/getAllNodes.Rd
man/setEdgeColorDirect.Rd
man/getNodeCount.Rd
man/setEdgeLabelWidthDirect.Rd
man/clearMsg.Rd
man/setNodeAttributes.Rd
man/getVisualStyleNames.Rd
man/cy2.edge.names.Rd
man/getLayoutPropertyType.Rd
man/CytoscapeConnectionClass-class.Rd
man/layoutNetwork.Rd
man/getDefaultNodeReverseSelectionColor.Rd
man/getWindowCount.Rd
man/setTooltipInitialDelay.Rd
man/setNodeLabelOpacityDirect.Rd
man/setEdgeSourceArrowShapeDirect.Rd
man/setEdgeSourceArrowOpacityDirect.Rd
man/initEdgeAttribute.Rd
man/hideSelectedEdges.Rd
man/getNodeAttributeNames.Rd
man/setEdgeSourceArrowRule.Rd
man/getAllNodeAttributes.Rd
man/setDefaultNodeColor.Rd
man/setEdgeLineStyleDirect.Rd
man/saveLayout.Rd
man/setNodeBorderWidthRule.Rd
man/hideNodes.Rd
man/setEdgeAttributes.Rd
man/setDefaultEdgeReverseSelectionColor.Rd
man/hidePanel.Rd
man/getEdgeAttributeNames.Rd
man/setDefaultNodeBorderColor.Rd
man/hideSelectedNodes.Rd
man/setNodeFillOpacityDirect.Rd
man/noa.names.Rd
man/setDefaultNodeFontSize.Rd
man/saveNetwork.Rd
man/getGraph.Rd
man/demoSimpleGraph.Rd
man/setEdgeSourceArrowColorDirect.Rd
man/getSelectedNodeCount.Rd
man/setEdgeTooltipRule.Rd
man/getLineStyles.Rd
man/setDefaultEdgeLineWidth.Rd
man/setNodeOpacityRule.Rd
man/setEdgeTargetArrowColorRule.Rd
man/CytoscapeConnection.Rd
vignettes/RCytoscape.Rnw
inst/cytoscape.vmoptions
inst/sweave.R
inst/vanillaTest.R
inst/CITATION
inst/randomAdjacencyMatrixGraphTest.R
inst/makefile
inst/test.R
inst/toHtml.R
inst/CytoscapeRPC.conf
inst/unitTests/test_cytoscape.R
inst/misc/cytoscapeRPC-examples.pl
inst/misc/many_networks.py
inst/misc/bugs.py
inst/misc/adjacencyMatrixExplorations.R
inst/misc/undirected-graphAM-script.R
inst/doc/RCytoscape.R
inst/doc/RCytoscape.pdf
inst/doc/RCytoscape.Rnw
