Returns the number of windows which currently exist in the Cytoscape Desktop.
a CytoscapeConnectionClass object.
cy <- CytoscapeConnection ()
count.at.start = getWindowCount (cy)
cw2 <- CytoscapeWindow ('getWindowCount.test1', graph=makeSimpleGraph())
cw3 <- CytoscapeWindow ('getWindowCount.test2', graph=makeSimpleGraph())
# should be two greater than 'count.at.start'
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