API for RNAinteract
Estimate Pairwise Interactions from multidimensional features
| Global functions | |
|---|---|
| RNAinteract | Man page |
| RNAinteract-class | Man page |
| RNAinteract-package | Man page |
| bindscreens | Man page Source code |
| computePI | Man page Source code |
| computePValues | Man page |
| createCellHTSFromFiles | Man page Source code |
| createRNAinteract | Man page Source code |
| createRNAinteractFromFiles | Man page Source code |
| doublePerturbationGrob | Man page Source code |
| embedPCA | Man page Source code |
| endReport | Man page Source code |
| estimateMainEffect | Man page Source code |
| getChannelNames | Man page Source code |
| getData | Man page Source code |
| getDoublePerturbationLabels | Source code |
| getIndDesignData | Man page Source code |
| getInvTransformation | Source code |
| getMain | Man page Source code |
| getMainNeg | Man page Source code |
| getReplicateData | Man page Source code |
| getScale | Man page Source code |
| getScreenNames | Man page Source code |
| getTransformation | Source code |
| grid.doublePerturbation | Man page Source code |
| grid.sgiColorkey | Source code |
| grid.sgiDendrogram | Source code |
| grid.sgiHeatmap | Man page Source code |
| grid.sgiHeatmap.2 | Source code |
| invtransform | Source code |
| makeDoublePerturbationAxis | Source code |
| makeDoublePerturbationLabels | Source code |
| makeDoublePerturbationMain | Source code |
| makeDoublePerturbationMainEffects | Source code |
| makeDoublePerturbationNI | Source code |
| makeDoublePerturbationPoints | Source code |
| makeDoublePerturbationVP | Source code |
| makeDoublePerturbationWTlines | Source code |
| normalizeMainEffectQuery | Man page Source code |
| normalizeMainEffectTemplate | Man page Source code |
| normalizePlateEffect | Man page Source code |
| ordertree | Source code |
| plotDoublePerturbation | Man page Source code |
| plotHeatmap | Man page Source code |
| plotIndDesignScatter | Source code |
| plotMainEffects | Source code |
| plotReplicateScatter | Source code |
| plotScatterErrorbars | Source code |
| plotScreenData | Source code |
| postDrawDetails.doublePerturbation | Man page Source code |
| reportAnnotation | Man page Source code |
| reportDoublePerturbation | Man page Source code |
| reportGeneLists | Man page Source code |
| reportHeatmap | Man page Source code |
| reportMainEffects | Man page Source code |
| reportNetworks | Man page Source code |
| reportScreenData | Man page Source code |
| reportStatistics | Man page Source code |
| sgi | Man page |
| sgisubset | Man page Source code |
| sgisubsetQueryDesign | Man page Source code |
| shiftboxes | Source code |
| show,RNAinteract-method | Man page |
| startReport | Man page Source code |
| summarizeScreens | Man page Source code |
| swaptree | Man page Source code |
| transform | Source code |
| zPrime | Source code |
