normalizeMainEffectQuery: normalize query main effect

In RNAinteract: Estimate Pairwise Interactions from multidimensional features

Description

Normalize for a time effect of the query genes.

Usage

normalizeMainEffectQuery(sgi, batch = NULL, time = NULL)

Arguments

sgi	An object of class RNAinteract.
batch	batch is a vector if integers with length equal to the number of queries. It assigns each query to a batch. Within each batch a linear regression is estimated assuming a linear effect between the order of queries and the main effects.
time	batch is a vector of numbers. A linear regression is estimated fitting the main effect as a function of the time.

Details

Normalizing the query main effect does not influence the estimation of the pairwise interaction term.

Value

An object of class RNAinteract.

Author(s)

Bernd Fischer

See Also

RNAinteract-package

Examples

data("sgi")
sgi <- normalizeMainEffectQuery(sgi)

RNAinteract documentation built on Nov. 8, 2020, 5:28 p.m.