grid.doublePerturbation: Double Perturbation Plot Grob
In RNAinteract: Estimate Pairwise Interactions from multidimensional features

Description Usage Arguments Details Value Author(s) See Also

View source: R/grid.doublePerturbation.R

These functions create a double perturbation grob for interaction screens. All interactions of one gene are displayed in one panel. The double perturbation readout level is plotted against the single perturbation level.

doublePerturbationGrob( mainEffect, dpEffect, mainEffectTarget,
                       range=NULL, main=NULL, xlab=NULL, ylab=NULL,
                       text=NULL, avoid.overlap=TRUE,
                       axisOnOrigin = FALSE,
                       drawBox = TRUE,
		       pch = 21, size=unit(1, "char"), fill = NULL,
                       gpMain = gpar(lty="dashed", lwd=3, col="cyan"),
                       gpNI = gpar(lty="dashed", lwd=3, col="orange"),
                       gpPoints = gpar(pch=21),
                       gpText = NULL,
                       gpAxis = NULL,
                       gpWTLines=NULL,
                       name=NULL, gp=NULL, vp=NULL )
grid.doublePerturbation(..., draw = TRUE)

# a helper function for doublePerturbationGrob:
postDrawDetails.doublePerturbation(x, recording)

`mainEffect`	A numeric vector of main effects.
`dpEffect`	A numeric vector of double perturbation effects.
`mainEffectTarget`	The main effect of the target gene (A single numeric value).
`range`	The range of the plot. Equals the `xlim`, `ylim` arguments of `plot`.
`main`	An overall title of the plot.
`xlab`	A title of the x-axis.
`ylab`	A title of the y-axis.
`text`	A character vector of text. Has to have the same length as `mainEffect`.
`avoid.overlap`	If `TRUE` (default) the text labels are moved such that the text is not overlapping.
`axisOnOrigin`	If `TRUE`, the x- and y-axis are draw on the origin of the data. If `FALSE` (default), the axis are drawn on the left and on the bottom.
`drawBox`	If `TRUE` (default), a box is drawn around the plot.
`pch`	Either an integer specifying a symbol or a single character to be used in plotting points. See `points` for possible values.
`size`	A unit object specifying the size of the plotting symbols.
`fill`	A list containing (some of) the following elements: `col` defines a fill color for the points. Either a single value or a vector of the same length as `mainEffect`. If `col` is defined, all other elements of fill have no effect. `values` is a numeric vector of the same length as `mainEffcet` that contains values that are mapped to colors. `at` is a numeric vector indicating breakpoints along the values. If not specified will be equally spaced on the range of the values. `colors` defines a set of colors from which a colorramp is created. `colramp` defines a colorramp directly. `colramp` has no effect, if `colors` is defined.
`gp`	An object of class `gpar`, typically the output from a call to the function `gpar`. This is basically a list of graphical parameter settings. Overall settings for the plot are set in `gp`.
`gpMain,gpNI`	An object of class `gpar` (See `gp`). `gpMain` and `gpNI` indicate the graphics parameter for the main effect lines and the non-interacting line.
`gpPoints,gpText,gpAxis,gpWTLines`	An object of class `gpar` (See `gp`). These arguments define graphical parameters for single compartments of the plot.
`name`	A character identifier.
`vp`	A Grid viewport object (or NULL).
`draw`	If `TRUE` the grob is drawn on the current device.
`...`	Further arguments passed to `doublePerturbationGrob`.
`x, recording`	Internal usage only.