createRNAinteract: create a RNAinteract object

In RNAinteract: Estimate Pairwise Interactions from multidimensional features

Description

Creates a RNAinteract object given data matrices, annotation, query and template design.

Usage

createRNAinteract(data, well, plate, pdim,
          	  Reagents, Targets,
                  TemplateDesign, QueryDesign,
                  Transformation = NULL)

Arguments

data	An array with dimensions features x screens x channels.
well	A vector of length #features with well names.
plate	A vector of length #features with plate numbers.
pdim	A vector of length 2 with plate dimensions (e.g. pdim=c(12,8)).
Reagents	A data.frame describing the reagents.
Targets	A data.frame describing the targets.
TemplateDesign	A data.frame with the layout of the template plates.
QueryDesign	A data.frame with the layout of the query plates.
Transformation	A Transformation that is applied to the data. If NULL the data is log2 transformed.

Details

See vignette("RNAinteract") for an example how to create an RNAinteract object.

Value

An object of class RNAinteract.

Author(s)

Bernd Fischer

References

~put references to the literature/web site here ~

See Also

RNAinteract-package, createRNAinteractFromFiles, createCellHTSFromFiles

RNAinteract documentation built on Nov. 8, 2020, 5:28 p.m.