API for RNAither
Statistical analysis of high-throughput RNAi screens
| Global functions | |
|---|---|
| BScore | Man page Source code |
| DRQualControl | Man page Source code |
| GOannotate | Source code |
| LiWongRank | Man page Source code |
| MannWhitney | Man page Source code |
| PlotSpatialDistrib | Source code |
| RNAither | Man page |
| RNAither-package | Man page |
| RankProduct | Man page Source code |
| SNRQualControl | Man page Source code |
| Ttest | Man page Source code |
| ZPRIMEQualControl | Man page Source code |
| ZPrime | Source code |
| ZScore | Man page Source code |
| ZScorePerScreen | Man page Source code |
| ZScorePlot | Man page Source code |
| ZScorePlotTwo | Man page Source code |
| attempt_fix | Source code |
| channelPlot | Man page Source code |
| check_layout_consistent | Source code |
| closestToZero | Man page Source code |
| compareHits | Man page Source code |
| compareReplicaPlates | Man page Source code |
| compareReplicateSD | Man page Source code |
| compareReplicateSDPerScreen | Man page Source code |
| compareReplicates | Man page Source code |
| controlDensity | Man page Source code |
| controlDensityPerPlate | Man page Source code |
| controlDensityPerScreen | Man page Source code |
| controlNorm | Man page Source code |
| createReplicateMatrix | Source code |
| createSubset | Man page Source code |
| dataset | Man page |
| datasetDrosophila | Man page |
| discardLabtek | Man page Source code |
| discardWells | Man page Source code |
| divNorm | Man page Source code |
| divideChannels | Man page Source code |
| dynamicRange | Source code |
| eraseDataSetColumn | Man page Source code |
| findReplicates | Man page Source code |
| function1 | Source code |
| function2 | Source code |
| function3 | Source code |
| function4a | Source code |
| function4b | Source code |
| function5 | Source code |
| function6 | Source code |
| function7 | Source code |
| furthestFromZero | Man page Source code |
| geneNameAnno | Source code |
| generateDatasetFile | Man page Source code |
| generateRepMatNoFilter | Man page Source code |
| generateReplicateMat | Man page Source code |
| gseaAnalysis | Man page Source code |
| gseaAnalysisPt1 | Source code |
| gseaAnalysisPt2 | Source code |
| gseaTableFunc | Source code |
| header | Man page |
| headerDrosophila | Man page |
| hitselectionPval | Man page Source code |
| hitselectionZscore | Man page Source code |
| hitselectionZscorePval | Man page Source code |
| incorporatepValVec | Man page Source code |
| indexSubset | Man page Source code |
| joinDatasetFiles | Man page Source code |
| joinDatasets | Man page Source code |
| listChooseIndex | Source code |
| lowessNorm | Man page Source code |
| mainAnalysis | Man page Source code |
| makeBoxplot4PlateType | Man page Source code |
| makeBoxplotControls | Man page Source code |
| makeBoxplotControlsPerPlate | Man page Source code |
| makeBoxplotControlsPerScreen | Man page Source code |
| makeBoxplotOverview | Source code |
| makeBoxplotPerPlate | Man page Source code |
| makeBoxplotPerScreen | Man page Source code |
| makeCorrPlots | Source code |
| makeCtrlBoxPlot | Source code |
| makeCtrlDensityPlot | Source code |
| makePlateDetailPlots | Source code |
| makeQCPlots | Source code |
| makefullbarplot | Source code |
| makevolcanoplot | Source code |
| multTestAdjust | Man page Source code |
| numCellQualControl | Man page Source code |
| orderGeneIDs | Man page Source code |
| pValVec1 | Man page |
| pValVec2 | Man page |
| percCellQualControl | Man page Source code |
| plotBar | Man page Source code |
| plotBarGeruest | Source code |
| plotControlHisto | Man page Source code |
| plotControlHistoPerplate | Man page Source code |
| plotControlHistoPerscreen | Man page Source code |
| plotHisto | Man page Source code |
| plotHistoPerplate | Man page Source code |
| plotHistoPerscreen | Man page Source code |
| plotQQ | Man page Source code |
| plotQQperplate | Man page Source code |
| plotQQperscreen | Man page Source code |
| plothist | Source code |
| plotmybar | Source code |
| plotqq | Source code |
| plotscatter | Source code |
| quantileNormalization | Man page Source code |
| reorderdata | Source code |
| replicatesCV | Man page Source code |
| replicatesSpearmancor | Man page Source code |
| rms | Man page Source code |
| rnaither | Man page Source code |
| saveDataset | Man page Source code |
| saveOldIntensityColumns | Man page Source code |
| savepValVec | Man page Source code |
| scoredDataset1 | Man page |
| scoredDataset2 | Man page |
| spatialDistrib | Man page Source code |
| spatialDistribHits | Man page Source code |
| subtractBackground | Man page Source code |
| sumChannels | Man page Source code |
| summarizeReplicates | Source code |
| summarizeReps | Man page Source code |
| summarizeRepsNoFiltering | Man page Source code |
| trim | Man page Source code |
| varAdjust | Man page Source code |
| vennDiag | Man page Source code |
| vennDiagfunc | Source code |
| volcanoPlot | Man page Source code |
| whtml | Source code |
| writeSummaryHtml | Source code |
| writegoresults | Source code |
| writehitlist | Source code |
| ylabCompute | Source code |
