getMolFromKEGG: Retrieve Drug Molecules in MOL Format from the KEGG Database
In Rcpi: Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Retrieve Drug Molecules in MOL Format from the KEGG Database
Usage
1
getMolFromKEGG(id, parallel = 5)
Arguments
id
A character vector, as the KEGG drug ID.
parallel
An integer, the parallel parameter, indicates how many
process the user would like to use for retrieving
the data (using RCurl), default is 5.
For regular cases, we recommend a number less than 20.
Details
This function retrieves drug molecules in MOL format from the KEGG database.
Value
A length of id character vector,
each element containing the corresponding drug molecule.
Author(s)
Nan Xiao <https://nanx.me>
See Also
See getSmiFromKEGG for retrieving drug molecules
in SMILES format from the KEGG database.
Examples
1
2
3
id = 'D00496' # Penicillamine
getMolFromKEGG(id)
Example output
OpenJDK 64-Bit Server VM warning: Can't detect primordial thread stack location - find_vma failed
[1] ""
Rcpi documentation built on Nov. 8, 2020, 8:23 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Retrieve Drug Molecules in MOL Format from the KEGG Database
Usage
1 | getMolFromKEGG(id, parallel = 5)
|
Arguments
id |
A character vector, as the KEGG drug ID. |
parallel |
An integer, the parallel parameter, indicates how many
process the user would like to use for retrieving
the data (using RCurl), default is |
Details
This function retrieves drug molecules in MOL format from the KEGG database.
Value
A length of id character vector,
each element containing the corresponding drug molecule.
Author(s)
Nan Xiao <https://nanx.me>
See Also
See getSmiFromKEGG for retrieving drug molecules
in SMILES format from the KEGG database.
Examples
1 2 3 | id = 'D00496' # Penicillamine
getMolFromKEGG(id)
|
Example output
OpenJDK 64-Bit Server VM warning: Can't detect primordial thread stack location - find_vma failed
[1] ""
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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