API for RegEnrich
Gene regulator enrichment analysis
| Global functions | |
|---|---|
| %>% | Man page |
| .local_grNet | Source code |
| .net | Source code |
| .plotRegTarExpr | Source code |
| .plot_Enrich | Source code |
| .rankScore | Source code |
| .regFET | Source code |
| .regSEA | Source code |
| .regenrich_diffExpr | Source code |
| .regenrich_enrich | Source code |
| .regenrich_network | Source code |
| .regenrich_network_Top | Source code |
| .regenrich_network_df | Source code |
| .regenrich_rankScore | Source code |
| .showRegenrichSet | Source code |
| .tarReg | Source code |
| COEN | Source code |
| DEA | Source code |
| DEA_LRT_DESeq2 | Source code |
| DEA_LRT_LM | Source code |
| DEA_limma | Source code |
| DeaSet-class | Man page |
| Enrich-class | Man page |
| GRN | Source code |
| Lyme_GSE63085 | Man page |
| RegenrichSet | Man page Source code |
| RegenrichSet-class | Man page |
| Score-class | Man page |
| TFs | Man page |
| TopNetwork-class | Man page |
| checkParams | Source code |
| dim,TopNetwork-method | Man page |
| getParamsIn | Source code |
| getResultsNames | Man page Source code |
| grNet | Source code |
| head,Score-method | Man page |
| head.Score | Source code |
| inOutput | Source code |
| isEmptyPFC | Source code |
| mat2Edge | Source code |
| newDeaSet | Man page Source code |
| newEnrich | Source code |
| newScore | Man page Source code |
| newTopNetwork | Man page Source code |
| plotOrders | Man page Source code |
| plotRegTarExpr | Man page Source code |
| plotSoftPower | Man page Source code |
| plot_Enrich | Man page |
| plot_Enrich,RegenrichSet-method | Man page |
| print.Score | Man page Source code |
| reexports | Man page |
| regenrich_diffExpr | Man page |
| regenrich_diffExpr,RegenrichSet-method | Man page |
| regenrich_enrich | Man page |
| regenrich_enrich,RegenrichSet-method | Man page |
| regenrich_network | Man page |
| regenrich_network,RegenrichSet-method | Man page |
| regenrich_network<- | Man page |
| regenrich_network<-,RegenrichSet,TopNetwork-method | Man page |
| regenrich_network<-,RegenrichSet,data.frame-method | Man page |
| regenrich_rankScore | Man page |
| regenrich_rankScore,RegenrichSet-method | Man page |
| results_DEA | Man page Source code |
| results_enrich | Man page Source code |
| results_expr | Man page Source code |
| results_score | Man page Source code |
| results_topNet | Man page Source code |
| show,DeaSet-method | Man page |
| show,Enrich-method | Man page |
| show,RegenrichSet-method | Man page |
| show,Score-method | Man page |
| show,TopNetwork-method | Man page |
| sortDataframe | Source code |
| tail,Score-method | Man page |
| tail.Score | Source code |
| topNet | Source code |
