Files in RegEnrich

Gene regulator enrichment analysis

NEWS.md

NAMESPACE

DESCRIPTION

R/topNet.R R/show.R R/regenrich_enrich.R R/regenrich_network.R R/results.R R/COEN.R R/genericMethods.R R/data.R R/regenrich_rankScore.R R/DEA.R R/regenrich_diffExpr.R R/regenrichClasses.R R/localUtils.R R/GRN.R R/plots.R R/regFET.R R/globals.R R/regSEA.R inst/doc/RegEnrich.R inst/doc/RegEnrich.Rmd

inst/doc/RegEnrich.html

build/vignette.rds

tests/testthat.R tests/testthat/test_1_1_1_limma_COEN_FET.R

vignettes/bibliography.bib

vignettes/RegEnrich.Rmd

data/TFs.rda

data/Lyme_GSE63085.rda

man/plot_Enrich.Rd man/reexports.Rd man/dim-TopNetwork-method.Rd man/Score.Rd man/RegenrichSet-class.Rd man/methodsOfShow.Rd man/plotOrders.Rd man/TopNetwork-class.Rd man/newDeaSet.Rd man/regenrich_enrich.Rd man/regenrich_diffExpr.Rd man/regenrich_rankScore.Rd man/RegenrichSet.Rd man/print.Score.Rd man/results_expr.Rd man/plotRegTarExpr.Rd man/newTopNetwork.Rd man/getResultsNames.Rd man/Enrich-class.Rd man/plotSoftPower.Rd man/headTailScore.Rd man/regenrich_network.Rd man/TFs.Rd man/Lyme_GSE63085.Rd man/DeaSet-class.Rd

RegEnrich documentation built on March 7, 2021, 2 a.m.