Score: Score class

In RegEnrich: Gene regulator enrichment analysis

Description

'Score' class inherits tibble ("tbl"). The objects of 'Score' class are to store information of regulator ranking scores.

Usage

newScore(
  reg = character(),
  negLogPDEA = numeric(),
  negLogPEnrich = numeric(),
  logFC = numeric(),
  score = numeric()
)

Arguments

reg	character, regulator IDs.
negLogPDEA	numeric, -log(p_DEA).
negLogPEnrich	numeric, -log(p_Enrich).
logFC	numeric, log2 fold change.
score	numeric, RegEnrich ranking score.

Value

newScore function returns a Score object.

Slots

names

character vector, containing "reg", "negLogPDEA", "negLogPEnrich", "logFC", and "score".

.Data

a list of length 5, each elements corresponds to the names slots.

row.names

character, regulators corresponding to .Data slot.

.S3Class

character vector, containing "tbl_df", "tbl", "data.frame", indicating the classes that 'Score' class inherits.

Examples

newScore()
newScore(letters[1:5], 1:5, 1:5, -2:2, seq(2, 1, len = 5))

RegEnrich documentation built on March 7, 2021, 2 a.m.