Enrich-class: Enrich class

In RegEnrich: Gene regulator enrichment analysis

Description

The 'Enrich' object is to store enrichment analysis results by either 'FET' method or 'GSEA' method.

Slots

topResult

data frame. The enrichment results that pass thresholds (default threshold is 0.05).

allResult

data frame. The enrichment results by FET or GSEA methods.

gene

character vector indicating the genes used for enrichment analysis.

namedScores

numeric vector, a vector of ranked scores (decendent), the names of the scores are the genes to perform enrichment analysis. Here the scores are p-value of each gene.

type

character indicating enrichment method, either 'FET' or 'GSEA'.

RegEnrich documentation built on March 7, 2021, 2 a.m.