TopNetwork-class: TopNetwork class

Description Slots

Description

The 'TopNetwork' object is to store either a full network (the percentage of top edges is 100 between 0 to 10).

Slots

element

tibble, the pool of targets in the network.

set

tibble, the pool of valid regulators.

elementset

tibble, regulator-target edges with edge weights. and the elements are regulators of the targets indicated by the element name.

directed

logical, whether the network is directed.

networkConstruction

character, by which method this network is constructed. Either 'COEN' (coexpression network using WGCNA), or 'GRN' (gene regulatory network using random forest), or 'new' (a network provided by the user).

percent

numeric, what percentage of the top edges are remained. The value must be between 0 (excluding) and 100 (including).

active

character, which data table is activated, the default is "elementset".


RegEnrich documentation built on March 7, 2021, 2 a.m.