Man pages for RegEnrich
Gene regulator enrichment analysis
| DeaSet-class | DeaSet class |
| dim-TopNetwork-method | dimention of 'TopNetwork' object |
| Enrich-class | Enrich class |
| getResultsNames | Inference the name of results of DESeq analysis by a formula... |
| headTailScore | head or tail of Score object |
| Lyme_GSE63085 | Example RNAseq dataset [Human] |
| methodsOfShow | methods of generic function "show" |
| newDeaSet | DeaSet object creator |
| newTopNetwork | TopNetwork object creator |
| plot_Enrich | Plot results of FET/GSEA enrichment analysis |
| plotOrders | Compare the orders of two vectors |
| plotRegTarExpr | Plot regulator and its targets expression |
| plotSoftPower | Plot soft power for WGCNA analysis |
| print.Score | Print Score object |
| reexports | Objects exported from other packages |
| regenrich_diffExpr | Differential expression analysis step |
| regenrich_enrich | Enrichment analysis step |
| regenrich_network | Regulator-target network inference step |
| regenrich_rankScore | Regulator scoring and ranking |
| RegenrichSet | RegenrichSet object creator |
| RegenrichSet-class | RegenrichSet class |
| results_expr | Result accessor functions |
| Score | Score class |
| TFs | Human gene regulators |
| TopNetwork-class | TopNetwork class |
