CopyEstimate-class: Container for results of fold change copy number estimation.
In Repitools: Epigenomic tools
Description
Constructor
Additional Slots
Description
Contains the genomic coordinates of regions, and fold change estimates.
Constructor
-
CopyEstimate(windows, unadj.CN, unadj.CN.seg)
Creates a CopyEstimate object.
windowsA GRanges object.
unadj.CNA matrix of fold changes.
unadj.CN.segA GRangesList object holding
the segmentation results.
Additional Slots
These are added to by absoluteCN or relativeCN
- type
A flag that contains if the copy number data is absolute or relative.
Repitools documentation built on Nov. 8, 2020, 7:52 p.m.
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Description Constructor Additional Slots
Description
Contains the genomic coordinates of regions, and fold change estimates.
Constructor
-
CopyEstimate(windows, unadj.CN, unadj.CN.seg)Creates a CopyEstimate object.windowsA
GRangesobject.unadj.CNA matrix of fold changes.
unadj.CN.segA
GRangesListobject holding the segmentation results.
Additional Slots
These are added to by absoluteCN or relativeCN
- type
A flag that contains if the copy number data is absolute or relative.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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