Function to calculate enrichment over the whole genome of sequencing reads.
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If sequencing reads need to be extended, the fragment size to be used.
Whether to print the progress of processing.
seq.len is supplied,
x is firstly extended, and then turned into
a coverage object. The number of extended reads covering each base pair of the
genome is then tabulated, and returned as a
data.frame containing columns
bases. For the
a list of such
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