API for Risa
Converting experimental metadata from ISA-tab into Bioconductor data structures
| Global functions | |
|---|---|
| AssayTab-class | Man page |
| ISATab-class | Man page |
| MSAssayTab-class | Man page |
| MicroarrayAssayTab-class | Man page |
| NMRAssayTab | Man page |
| Risa | Man page |
| Risa-package | Man page |
| SeqAssayTab | Man page |
| [,AssayTab,ANY,ANY,ANY-method | Man page |
| [,AssayTab-method | Man page |
| [,ISATab,ANY,ANY,ANY-method | Man page |
| [,ISATab-method | Man page |
| [<-,AssayTab,ANY,ANY,ANY-method | Man page |
| [<-,AssayTab-method | Man page |
| [<-,ISATab,ANY,ANY,ANY-method | Man page |
| [<-,ISATab-method | Man page |
| checkFilesExist | Source code |
| getAnnotatedDataFrameAssay | Man page Source code |
| getAssayRawDataFilenames | Man page |
| getAssayRawDataFilenames,AssayTab,logical-method | Man page |
| getAssayRawDataFilenames,MSAssayTab,logical-method | Man page |
| getAssayRawDataFilenames,MicroarrayAssayTab,logical-method | Man page |
| getAssayRawDataFilenames,NMRAssayTab,logical-method | Man page |
| getAssayRawDataFilenames,SeqAssayTab,logical-method | Man page |
| getAssayRawDataFilenames-methods | Man page |
| getExpressionSet | Man page Source code |
| getMIAMEMetadata | Man page Source code |
| getMSAssayFilenames | Man page Source code |
| getMicroarrayAssayFilenames | Man page Source code |
| getMicroarrayDerivedDataFilenames | Source code |
| getMicroarrayDerivedDataFilenamesAssay | Source code |
| getPackagesInBiocView | Source code |
| getRawDataFilenames | Man page |
| getRawDataFilenames,ISATab,logical-method | Man page |
| getRawDataFilenames-methods | Man page |
| getStudyFilename | Man page Source code |
| getStudyFilenameIndex | Source code |
| isMSAssay | Man page Source code |
| isMicroarrayAssay | Man page Source code |
| processAssayXcmsSet | Man page Source code |
| processAssayXcmsSet.1factor | Man page Source code |
| readISAtab | Man page Source code |
| readISAtabFiles | Source code |
| readISAtabZip | Source code |
| suggestBiocPackage | Man page Source code |
| updateAssayMetadata | Man page Source code |
| validMSAssayTabObject | Source code |
| validMicroarrayAssayTabObject | Source code |
| write.ISAtab | Man page Source code |
| write.assay.file | Man page Source code |
| write.investigation.file | Man page Source code |
| write.study.file | Man page Source code |
