processAssayXcmsSet: Build an xcmsSet object given a mass spectrometry assay and...
In Risa: Converting experimental metadata from ISA-tab into Bioconductor data structures
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
processAssayXcmsSet retrieves an xcmsSet object given and ISA-tab object and one of its assay filenames.
Usage
1
processAssayXcmsSet(isa, assay.filename, ...)
Arguments
isa
an ISA object, as retrieved by the function readISAtab
assay.filename
a boolean indicating to show messages for the different steps, if TRUE, or not to show them, if FALSE
...
extra arguments that can be pass down to the xcmsSet function from the xcms package
Value
the xcmsSet object built from the assay metadata, considering all the factors defined, and data files
Author(s)
Steffen Neumann, Alejandra Gonzalez-Beltran /
Maintainer: Alejandra Gonzalez-Beltran isatools@googlegroups.com
See Also
Examples
1
2
3
faahkoISA = readISAtab(find.package("faahKO"))
assay.filename <- faahkoISA["assay.filenames"][[1]]
xset = processAssayXcmsSet(faahkoISA, assay.filename)
Risa documentation built on Nov. 8, 2020, 5:35 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also Examples
Description
processAssayXcmsSet retrieves an xcmsSet object given and ISA-tab object and one of its assay filenames.
Usage
1 | processAssayXcmsSet(isa, assay.filename, ...)
|
Arguments
isa |
an ISA object, as retrieved by the function |
assay.filename |
a boolean indicating to show messages for the different steps, if TRUE, or not to show them, if FALSE |
... |
extra arguments that can be pass down to the xcmsSet function from the xcms package |
Value
the xcmsSet object built from the assay metadata, considering all the factors defined, and data files
Author(s)
Steffen Neumann, Alejandra Gonzalez-Beltran / Maintainer: Alejandra Gonzalez-Beltran isatools@googlegroups.com
See Also
Examples
1 2 3 | faahkoISA = readISAtab(find.package("faahKO"))
assay.filename <- faahkoISA["assay.filenames"][[1]]
xset = processAssayXcmsSet(faahkoISA, assay.filename)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.