getAnnotatedDataFrameAssay: Retrieves an AnnotatedDataFrameAssay.
In Risa: Converting experimental metadata from ISA-tab into Bioconductor data structures
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Retrieves an AnnotatedDataFrameAssay.
Usage
1
getAnnotatedDataFrameAssay(isa, assay.filename)
Arguments
isa
An object of the ISAtab-class.
assay.filename
Value
An annotated data frame.
Author(s)
Alejandra Gonzalez-Beltran
See Also
ISATab-class, AnnotatedDataFrame
Examples
1
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3
4
5
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8
9
10
faahkoISAzip <- system.file("extdata","faahKO-metadata.zip", package="Risa")
faahkoISA <- readISAtab(zipfile = faahkoISAzip, path = file.path(system.file("extdata", package="Risa"),"faahkoISA"), verbose =TRUE)
faahkoADF <- getAnnotatedDataFrameAssay(faahkoISA, faahkoISA@assay.filenames[[1]])
str(faahkoADF)
armstrongISAzip <- system.file("extdata","ARMSTRONG-S-3-metadata.zip", package="Risa")
armstrongISA <- readISAtab(zipfile = armstrongISAzip, path = file.path(system.file("extdata", package="Risa"),"armstrongISA"), verbose =TRUE)
armstrongADF <- getAnnotatedDataFrameAssay(armstrongISA, armstrongISA@assay.filenames[[1]])
str(armstrongADF)
Risa documentation built on Nov. 8, 2020, 5:35 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Retrieves an AnnotatedDataFrameAssay.
Usage
1 | getAnnotatedDataFrameAssay(isa, assay.filename)
|
Arguments
isa |
An object of the |
assay.filename |
Value
An annotated data frame.
Author(s)
Alejandra Gonzalez-Beltran
See Also
ISATab-class, AnnotatedDataFrame
Examples
1 2 3 4 5 6 7 8 9 10 | faahkoISAzip <- system.file("extdata","faahKO-metadata.zip", package="Risa")
faahkoISA <- readISAtab(zipfile = faahkoISAzip, path = file.path(system.file("extdata", package="Risa"),"faahkoISA"), verbose =TRUE)
faahkoADF <- getAnnotatedDataFrameAssay(faahkoISA, faahkoISA@assay.filenames[[1]])
str(faahkoADF)
armstrongISAzip <- system.file("extdata","ARMSTRONG-S-3-metadata.zip", package="Risa")
armstrongISA <- readISAtab(zipfile = armstrongISAzip, path = file.path(system.file("extdata", package="Risa"),"armstrongISA"), verbose =TRUE)
armstrongADF <- getAnnotatedDataFrameAssay(armstrongISA, armstrongISA@assay.filenames[[1]])
str(armstrongADF)
|
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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