getMSAssayFilenames: Retrieves a vector with the assay filenames corresponding to...
In Risa: Converting experimental metadata from ISA-tab into Bioconductor data structures
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Given an object from the ISAtab-class, this method retrieves a vector with the assay filenames corresponding to mass spectrometry (identified by having a column called 'Raw Spectral Data File'.
Usage
1
Arguments
isa
an object from the ISAtab class
Value
A character vector with the assay filenames corresponding to mass spectrometry.
Author(s)
Alejandra Gonzalez-Beltran
Examples
1
2
3
4
data.dir <- system.file("extdata", package="Risa")
isazip <- system.file("extdata","faahKO-metadata.zip", package="Risa")
faahkoISA <- readISAtab(zipfile = isazip, path = file.path(data.dir,"faahKOISA"), verbose =TRUE)
ms.assay.filenames <- getMSAssayFilenames(faahkoISA)
Risa documentation built on Nov. 8, 2020, 5:35 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Given an object from the ISAtab-class, this method retrieves a vector with the assay filenames corresponding to mass spectrometry (identified by having a column called 'Raw Spectral Data File'.
Usage
1 |
Arguments
isa |
an object from the ISAtab class |
Value
A character vector with the assay filenames corresponding to mass spectrometry.
Author(s)
Alejandra Gonzalez-Beltran
Examples
1 2 3 4 | data.dir <- system.file("extdata", package="Risa")
isazip <- system.file("extdata","faahKO-metadata.zip", package="Risa")
faahkoISA <- readISAtab(zipfile = isazip, path = file.path(data.dir,"faahKOISA"), verbose =TRUE)
ms.assay.filenames <- getMSAssayFilenames(faahkoISA)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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