write.isatab: Write an ISA-Tab dataset

In Risa: Converting experimental metadata from ISA-tab into Bioconductor data structures

Description

write.ISAtab writes a ISA-Tab dataset.

Usage

write.ISAtab(isa, path = getwd())

Arguments

isa	the ISA-Tab object as built with the function readISAtab.
path	the directory where the files are going to be written, by default is the working directory

Author(s)

Alejandra Gonzalez-Beltran / Maintainer: Alejandra Gonzalez-Beltran, ISA Team <[e-mail]>

See Also

write.investigation.file, write.study.file, write.assay.file, readISAtab

Examples

    ### Example of writing the study file of faahKO ISA-Tab dataset into the temp director
    data.dir <- system.file("extdata", package="Risa")
    isazip <- system.file("extdata","faahKO-metadata.zip", package="Risa")
    faahkoISA <- readISAtab(zipfile = isazip, path = file.path(data.dir,"faahKOISA"), verbose =TRUE)      
    temp = tempdir()
    write.ISAtab(faahkoISA, temp)

Risa documentation built on Nov. 8, 2020, 5:35 p.m.