isMicroarrayAssay: Determines if an assay is microarray-based or not.
In Risa: Converting experimental metadata from ISA-tab into Bioconductor data structures
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/Risa-microarray.R
Description
Retrieves a boolean value indicating wether the assay filename given as parameter corresponds to a microarray-based assay or not.
Usage
1
isMicroarrayAssay(isa, assay.filename)
Arguments
isa
An object of the ISAtab-class.
assay.filename
A string indicating the name of an assay file. It must correspond to a microarray-based assay for the function to return a valid value.
Value
Retrieves a boolean value.
Author(s)
Alejandra Gonzalez-Beltran
See Also
Examples
1
2
3
4
5
6
data.dir <- system.file("extdata", package="Risa")
isazip <- system.file("extdata","ARMSTRONG-S-3-metadata.zip", package="Risa")
isa <- readISAtab(zipfile = isazip, path = file.path(data.dir,"ARMSTRONG_ISA"), verbose =TRUE)
assay.filename <- isa@assay.filenames[[1]]
isMicroarrayAssay(isa, assay.filename)
Risa documentation built on Nov. 8, 2020, 5:35 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also Examples
View source: R/Risa-microarray.R
Description
Retrieves a boolean value indicating wether the assay filename given as parameter corresponds to a microarray-based assay or not.
Usage
1 | isMicroarrayAssay(isa, assay.filename)
|
Arguments
isa |
An object of the |
assay.filename |
A string indicating the name of an assay file. It must correspond to a microarray-based assay for the function to return a valid value. |
Value
Retrieves a boolean value.
Author(s)
Alejandra Gonzalez-Beltran
See Also
Examples
1 2 3 4 5 6 | data.dir <- system.file("extdata", package="Risa")
isazip <- system.file("extdata","ARMSTRONG-S-3-metadata.zip", package="Risa")
isa <- readISAtab(zipfile = isazip, path = file.path(data.dir,"ARMSTRONG_ISA"), verbose =TRUE)
assay.filename <- isa@assay.filenames[[1]]
isMicroarrayAssay(isa, assay.filename)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.