API for SCOPE
A normalization and copy number estimation method for single-cell DNA sequencing
| Global functions | |
|---|---|
| Estep | Source code |
| EstepG | Source code |
| Mstep | Source code |
| MstepG | Source code |
| QCmetric.scopeDemo | Man page |
| Y_sim | Man page |
| compute_cs_lratio | Source code |
| coverageObj.scopeDemo | Man page |
| create_chptsmat | Source code |
| fitGC | Source code Source code |
| get_bam_bed | Man page Source code |
| get_coverage_scDNA | Man page Source code |
| get_gc | Man page |
| get_gini | Man page Source code |
| get_mapp | Man page Source code |
| get_masked_ref | Source code |
| get_samp_QC | Man page Source code |
| getfGC | Source code |
| getfGC2 | Source code |
| getfGCG | Source code |
| getfGC_foreach | Source code |
| getfGCj | Source code |
| getfGCj_foreach | Source code |
| iCN_sim | Man page |
| initialize_ploidy | Man page Source code |
| initialize_ploidy_group | Man page Source code |
| normObj.scopeDemo | Man page |
| normalize_codex2_ns_noK | Man page Source code |
| normalize_scope | Man page Source code |
| normalize_scope_foreach | Man page Source code |
| normalize_scope_group | Man page Source code |
| perform_qc | Man page Source code |
| plot_EM_fit | Man page Source code |
| plot_iCN | Man page Source code |
| ref.scopeDemo | Man page |
| ref_sim | Man page |
| search_cs_nested | Source code |
| segment_CBScs | Man page Source code |
