Files in SCOPE

A normalization and copy number estimation method for single-cell DNA sequencing

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

data/coverageObj.scopeDemo.rda

data/ref.scopeDemo.rda

data/normObj.scopeDemo.rda

data/demo.rda

data/QCmetric.scopeDemo.rda

data/iCN_sim.rda

R/get_gini.R R/segment_CBScs.R R/get_mapp.R R/get_bam_bed.R R/get_samp_QC.R R/initialize_ploidy.R R/normalize_codex2_ns_noK.R R/normalize_scope.R R/normalize_scope_group.R R/normalize_scope_foreach.R R/initialize_ploidy_group.R R/get_coverage_scDNA.R R/plot_EM_fit.R R/data.R R/get_gc.R R/plot_iCN.R R/perform_qc.R vignettes/SCOPE_vignette.Rmd man/get_bam_bed.Rd man/get_mapp.Rd man/plot_iCN.Rd man/iCN_sim.Rd man/get_gc.Rd man/plot_EM_fit.Rd man/get_samp_QC.Rd man/normalize_scope_foreach.Rd man/normalize_scope_group.Rd man/normalize_scope.Rd man/normalize_codex2_ns_noK.Rd man/normObj.scopeDemo.Rd man/coverageObj.scopeDemo.Rd man/Y_sim.Rd man/get_gini.Rd man/ref_sim.Rd man/segment_CBScs.Rd man/QCmetric.scopeDemo.Rd man/perform_qc.Rd man/get_coverage_scDNA.Rd man/ref.scopeDemo.Rd man/initialize_ploidy.Rd man/initialize_ploidy_group.Rd tests/testthat.R tests/testthat/test_get_gini.R tests/testthat/test_initialize_ploidy.R tests/testthat/test_normalize_scope.R tests/testthat/test_segment_CBScs.R tests/testthat/test_get_bam_bed.R inst/doc/SCOPE_vignette.R inst/doc/SCOPE_vignette.Rmd

inst/doc/SCOPE_vignette.html

inst/docs/split_script.py

SCOPE documentation built on Nov. 8, 2020, 5:27 p.m.