API for SPONGE
Sparse Partial Correlations On Gene Expression
| Global functions | |
|---|---|
| ceRNA_interactions | Man page |
| checkLambda | Source code |
| check_and_convert_expression_data | Man page Source code |
| compute_null_model | Source code |
| compute_p_values | Source code |
| compute_pcor | Source code |
| determine_cutoffs_for_null_model_partitioning | Source code |
| dtcomb | Source code |
| fn_elasticnet | Man page Source code |
| fn_gene_miRNA_F_test | Man page Source code |
| fn_get_model_coef | Man page Source code |
| fn_get_rss | Man page Source code |
| fn_get_shared_miRNAs | Man page Source code |
| gene_expr | Man page |
| genes_pairwise_combinations | Man page Source code |
| get.q | Source code |
| isplitDT2 | Source code |
| mir_expr | Man page |
| mir_interactions | Man page |
| mircode_ensg | Man page |
| mircode_symbol | Man page |
| precomputed_cov_matrices | Man page |
| precomputed_null_model | Man page |
| processChunk | Source code |
| quadraticSolver | Source code |
| sample_zero_mscor_cov | Man page Source code |
| sample_zero_mscor_data | Man page Source code |
| schur | Source code |
| split_cols | Source code |
| split_rows | Source code |
| sponge | Man page Source code |
| sponge_build_null_model | Man page Source code |
| sponge_compute_p_values | Man page Source code |
| sponge_edge_centralities | Man page Source code |
| sponge_gene_miRNA_interaction_filter | Man page Source code |
| sponge_network | Man page Source code |
| sponge_node_centralities | Man page Source code |
| sponge_plot_network | Man page Source code |
| sponge_plot_network_centralities | Man page Source code |
| sponge_plot_simulation_results | Man page Source code |
| sponge_run_benchmark | Man page Source code |
| sponge_subsampling | Man page Source code |
| targetscan_ensg | Man page |
| targetscan_symbol | Man page |
