Files in SPONGE
Sparse Partial Correlations On Gene Expression
README.md
SPONGE documentation built on Nov. 8, 2020, 5:39 p.m.
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/mir_expr.RData
data/gene_expr.RData
data/mir_interactions.RData
data/ceRNA_interactions.RData
data/scor_simulation_cov_matrices.RData
data/precomputed_null_model.rda
data/mircode.RData
data/targetscan.RData
R/fn_subsampling.R
R/fn_plots.R
R/fn_network_centralities.R
R/fn_sponge.R
R/fn_check_and_convert_expr_data.R
R/fn_simulation.R
R/fn_significance.R
R/fn_gene_miRNA_F_test.R
R/fn_plot_simulation_results.R
R/data.R
R/fn_benchmark.R
R/fn_elastic_net.R
R/fn_gene_miRNA_regression_models.R
vignettes/overview.png
vignettes/sponge_logo.png
vignettes/SPONGE.Rmd
man/check_and_convert_expression_data.Rd
man/fn_get_shared_miRNAs.Rd
man/sponge_build_null_model.Rd
man/sponge_compute_p_values.Rd
man/fn_elasticnet.Rd
man/sample_zero_mscor_cov.Rd
man/targetscan_ensg.Rd
man/sample_zero_mscor_data.Rd
man/sponge_plot_network_centralities.Rd
man/sponge_subsampling.Rd
man/gene_expr.Rd
man/sponge_node_centralities.Rd
man/genes_pairwise_combinations.Rd
man/sponge_plot_simulation_results.Rd
man/sponge_network.Rd
man/ceRNA_interactions.Rd
man/targetscan_symbol.Rd
man/fn_get_rss.Rd
man/fn_get_model_coef.Rd
man/precomputed_null_model.Rd
man/fn_gene_miRNA_F_test.Rd
man/sponge_edge_centralities.Rd
man/sponge_gene_miRNA_interaction_filter.Rd
man/mircode_symbol.Rd
man/mircode_ensg.Rd
man/mir_expr.Rd
man/mir_interactions.Rd
man/sponge.Rd
man/precomputed_cov_matrices.Rd
man/sponge_plot_network.Rd
man/sponge_run_benchmark.Rd
tests/testthat.R
tests/testthat/test_regression_filter.R
tests/testthat/test_cor_df_cut.R
tests/testthat/test_significance.R
tests/testthat/test_sponge.R
tests/testthat/test_elastic_net.R
tests/testthat/test_network_analysis.R
tests/testthat/test_simulation.R
inst/CITATION
inst/doc/SPONGE.html
inst/doc/SPONGE.R
inst/doc/SPONGE.Rmd
