add_diff_exp_color: add_diff_exp_color
In STRINGdb: STRINGdb (Search Tool for the Retrieval of Interacting proteins database)
Description
Usage
Arguments
Value
Author(s)
Description
Take in input a dataframe containing a logFC column that reports the logarithm of the difference in expression level.
Add a "color" column to the data frame such that strongly downregulated genes are colored in green and strong upregulated genes are in red.
When the down or up-regulation is instead weak the intensity of the color gets weaker as well, accordingly.
Usage
1
2
## S4 method for signature 'STRINGdb'
add_diff_exp_color(screen, logFcColStr="logFC" )
Arguments
screen
Dataframe containing the results of the experiment (e.g. the analyzed results of a microarray or RNAseq experiment)
logFcColStr
name of the colum that contains the logFC of the expression
Value
vector containing the colors
Author(s)
Andrea Franceschini
STRINGdb documentation built on March 10, 2021, 2 a.m.
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Description Usage Arguments Value Author(s)
Description
Take in input a dataframe containing a logFC column that reports the logarithm of the difference in expression level. Add a "color" column to the data frame such that strongly downregulated genes are colored in green and strong upregulated genes are in red. When the down or up-regulation is instead weak the intensity of the color gets weaker as well, accordingly.
Usage
1 2 | ## S4 method for signature 'STRINGdb'
add_diff_exp_color(screen, logFcColStr="logFC" )
|
Arguments
screen |
Dataframe containing the results of the experiment (e.g. the analyzed results of a microarray or RNAseq experiment) |
logFcColStr |
name of the colum that contains the logFC of the expression |
Value
vector containing the colors
Author(s)
Andrea Franceschini
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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