remove_homologous_interactions: remove_homologous_interactions
In STRINGdb: STRINGdb (Search Tool for the Retrieval of Interacting proteins database)
Description
Usage
Arguments
Value
Author(s)
Description
With this method it is possible to remove the interactions that are composed by a pair of homologous/similar proteins, having a similarity bitscore between each other higher than a threshold.
Usage
1
2
## S4 method for signature 'STRINGdb'
remove_homologous_interactions(interactions_dataframe, bitscore_threshold = 60)
Arguments
interactions_dataframe
a data frame contaning the sorted interactions to be benchmarked. The data frame should have the following column names: proteinA, proteinB, score
bitscore_threshold
filter out pairs of homologous proteins, having a similarity bitscore higher than this parameter
Value
interactions data frame where the homologous pairs have been removed, from the input interactions' data frame
Author(s)
Andrea Franceschini
STRINGdb documentation built on March 10, 2021, 2 a.m.
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Description Usage Arguments Value Author(s)
Description
With this method it is possible to remove the interactions that are composed by a pair of homologous/similar proteins, having a similarity bitscore between each other higher than a threshold.
Usage
1 2 | ## S4 method for signature 'STRINGdb'
remove_homologous_interactions(interactions_dataframe, bitscore_threshold = 60)
|
Arguments
interactions_dataframe |
a data frame contaning the sorted interactions to be benchmarked. The data frame should have the following column names: proteinA, proteinB, score |
bitscore_threshold |
filter out pairs of homologous proteins, having a similarity bitscore higher than this parameter |
Value
interactions data frame where the homologous pairs have been removed, from the input interactions' data frame
Author(s)
Andrea Franceschini
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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