plot_network: plot_network

In STRINGdb: STRINGdb (Search Tool for the Retrieval of Interacting proteins database)

Description

Plots an image of the STRING network with the given proteins.

Usage

## S4 method for signature 'STRINGdb'
plot_network(string_ids, payload_id=NULL, required_score=NULL, add_link=TRUE, add_summary=TRUE)

Arguments

string_ids	a vector of STRING identifiers
payload_id	an identifier of payload data on the STRING server (see method post_payload for additional informations)
required_score	a threshold on the score that overrides the default score_threshold, that we use only for the picture
add_link	parameter to specify whether you want to generate and add a short link to the relative page in STRING. As default this option is active but we suggest to deactivate it in case one is generating many images (e.g. in a loop). Deactivating this option avoids to generate and store a lot of short-urls on our server.
add_summary	parameter to specify whether you want to add a summary text to the picture. This summary includes a p-value and the number of proteins/interactions.

Author(s)

Andrea Franceschini

STRINGdb documentation built on March 10, 2021, 2 a.m.