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inst/script/qa-test.R
In ShortRead: FASTQ input and manipulation
## fastq
nLanes <- 50
library(ShortRead)
sp <- SolexaPath(system.file('extdata', package='ShortRead'))
rfq <- readFastq(analysisPath(sp), pattern="s_1_sequence.txt")
nms <- sprintf("file_%d.fastq", seq_len(nLanes))
qas <- lapply(nms, qa, dirPath=rfq)
qa <- do.call(rbind, qas)
res <- browseURL(report(qa))
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ShortRead documentation built on Nov. 8, 2020, 8:02 p.m.
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## fastq
nLanes <- 50
library(ShortRead)
sp <- SolexaPath(system.file('extdata', package='ShortRead'))
rfq <- readFastq(analysisPath(sp), pattern="s_1_sequence.txt")
nms <- sprintf("file_%d.fastq", seq_len(nLanes))
qas <- lapply(nms, qa, dirPath=rfq)
qa <- do.call(rbind, qas)
res <- browseURL(report(qa))
Try the ShortRead package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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