Files in StructuralVariantAnnotation

Variant annotations for structural variants

README.md

NEWS

NAMESPACE

DESCRIPTION

CODE_OF_CONDUCT.md

build/vignette.rds

R/BreakpointGRanges.R R/util.R R/StructuralVariantAnnotation.R R/extensions-VCF.R R/unittesthelper.R R/vcfConstants.R R/plotting.R vignettes/vignettes.Rmd man/align_breakpoints.Rd man/breakpointgr2bedpe.Rd man/isSymbolic.Rd man/pairs2breakpointgr.Rd man/partner.Rd man/findInsDupOverlaps.Rd man/breakendRanges.Rd man/dot-isSymbolic.Rd man/breakpointGRangesToVCF.Rd man/dot-pairwiseLCPrefix.Rd man/findBreakpointOverlaps.Rd man/dot-toVcfBreakendNotationAlt.Rd man/extractReferenceSequence.Rd man/breakpointRanges.Rd man/dot-testrecord.Rd man/dot-testfile.Rd man/calculateReferenceHomology.Rd man/simpleEventLength.Rd man/dot-unXStringSet.Rd man/grapes-null-grapes.Rd man/simpleEventType.Rd man/countBreakpointOverlaps.Rd man/dot-svLen.Rd man/elementExtract.Rd man/isStructural.Rd man/dot-constrict.Rd man/StructuralVariantAnnotation.Rd man/extractBreakpointSequence.Rd man/grapes-na-grapes.Rd tests/testthat.R tests/testthat/test-plotting.R tests/testthat/test-BreakpointGRanges.R tests/testthat/test-extensions-VCF.R tests/testthat/test-util.R inst/doc/vignettes.R

inst/doc/vignettes.html

inst/doc/vignettes.Rmd

inst/extdata/pindel-0.2.5b6.vcf

inst/extdata/COLO829T.purple.sv.ann.vcf.gz

inst/extdata/breakdancer-1.4.5.vcf

inst/extdata/unnamed.bedpe

inst/extdata/na12878_chr22_Sudmunt2015.vcf

inst/extdata/crest.vcf

inst/extdata/delly-0.6.8.vcf

inst/extdata/manta-0.29.6.vcf

inst/extdata/gridss-missingPartner.vcf

inst/extdata/gridss.bedpe

inst/extdata/gridss.vcf

inst/extdata/vcf4.2.example.sv.vcf

inst/extdata/breakend.vcf

inst/extdata/simple.vcf

inst/extdata/na12878_chr22_hydra.vcf

inst/extdata/na12878_chr22_crest.vcf

inst/extdata/manta-1.1.1.vcf

inst/extdata/multipleAltSVs.vcf

inst/extdata/gridss-na12878.vcf

inst/extdata/tigra-0.3.7.vcf

StructuralVariantAnnotation documentation built on Nov. 8, 2020, 5:43 p.m.