Extracting unpartnered breakend structural variants as a GRanges
1 2 3 4
A VCF object.
The VCF standard supports single breakends where a breakend is not part of a novel adjacency and lacks a mate. This function supports parsing single breakends to GRanges, where a dot symbol is used in the ALT field to annotate the directional information. Single breakends provide insights to situations when one side of the structural variant is not observed, due to e.g. low mappability, non-reference contigs, complex multi-break operations, etc. See Section 5.4.9 of https://samtools.github.io/hts-specs/VCFv4.3.pdf for details of single breakends.
A GRanges object of SVs.
VCF: Extracting unpartnered structural variants as
1 2 3 4 5
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.