align_breakpoints: Adjusting the nominal position of a pair of partnered...
In StructuralVariantAnnotation: Variant annotations for structural variants
Description
Usage
Arguments
Value
View source: R/extensions-VCF.R
Description
Adjusting the nominal position of a pair of partnered breakpoint.
Usage
1
2
3
4
5
align_breakpoints(
vcf,
align = c("centre"),
is_higher_breakend = names(vcf) < info(vcf)$PARID
)
Arguments
vcf
A VCF object.
align
The alignment type.
is_higher_breakend
Breakpoint ID ordering.
Value
A VCF object with adjusted nominal positions.
StructuralVariantAnnotation documentation built on Nov. 8, 2020, 5:43 p.m.
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Description Usage Arguments Value
View source: R/extensions-VCF.R
Description
Adjusting the nominal position of a pair of partnered breakpoint.
Usage
1 2 3 4 5 | align_breakpoints(
vcf,
align = c("centre"),
is_higher_breakend = names(vcf) < info(vcf)$PARID
)
|
Arguments
vcf |
A VCF object. |
align |
The alignment type. |
is_higher_breakend |
Breakpoint ID ordering. |
Value
A VCF object with adjusted nominal positions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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