StructuralVariantAnnotation contains useful helper functions for dealing with structural variants in VCF format. The packages contains functions for parsing VCFs from a number of popular callers as well as functions for dealing with breakpoints involving two separate genomic loci encoded as GRanges objects.


The StructuralVariantAnnotation package can be installed using BioConductor:

if (!requireNamespace("BiocManager", quietly=TRUE)) {

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StructuralVariantAnnotation documentation built on Nov. 8, 2020, 5:43 p.m.