dot-toVcfBreakendNotationAlt: Converts to breakend notation
In StructuralVariantAnnotation: Variant annotations for structural variants
Description
Usage
Arguments
Value
Description
Converts to breakend notation
Usage
1
.toVcfBreakendNotationAlt(gr, insSeq = gr$insSeq, ref = gr$REF)
Arguments
gr
GRanges object.
insSeq
insert sequence of the GRanges.
ref
reference sequence of the GRanges.
Value
breakendAlt or breakpointAlt depending on whether the variant is partnered.
StructuralVariantAnnotation documentation built on Nov. 8, 2020, 5:43 p.m.
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Description Usage Arguments Value
Description
Converts to breakend notation
Usage
1 | .toVcfBreakendNotationAlt(gr, insSeq = gr$insSeq, ref = gr$REF)
|
Arguments
gr |
GRanges object. |
insSeq |
insert sequence of the GRanges. |
ref |
reference sequence of the GRanges. |
Value
breakendAlt or breakpointAlt depending on whether the variant is partnered.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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