calculateCoveredProtein: Evaluate marker protein coverage
In SubCellBarCode: SubCellBarCode: Integrated workflow for robust mapping and visualizing whole human spatial proteome

Given the proteomics data, number of overlapped marker proteins is calculated. Bar plot for each compartment is plotted.

1	calculateCoveredProtein(proteinIDs, markerproteins)

`proteinIDs`	character; gene symbol id
`markerproteins`	character; 3365 proteins gene symbol ids

covered.proteins

{

df <- loadData(SubCellBarCode::hcc827Ctrl)

c.prots <- calculateCoveredProtein(rownames(df), markerProteins[,1])
}

SubCellBarCode documentation built on Nov. 8, 2020, 5:26 p.m.

SubCellBarCode index

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