calculateCoveredProtein: Evaluate marker protein coverage

Description Usage Arguments Value Examples

View source: R/coveredMarkerProtein.R

Description

Given the proteomics data, number of overlapped marker proteins is calculated. Bar plot for each compartment is plotted.

Usage

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calculateCoveredProtein(proteinIDs, markerproteins)

Arguments

proteinIDs

character; gene symbol id

markerproteins

character; 3365 proteins gene symbol ids

Value

covered.proteins

Examples

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{

df <- loadData(SubCellBarCode::hcc827Ctrl)

c.prots <- calculateCoveredProtein(rownames(df), markerProteins[,1])
}

SubCellBarCode documentation built on Nov. 8, 2020, 5:26 p.m.