svmExternalData: Peptide/exon/transcript centric or PTM enriched...

In SubCellBarCode: SubCellBarCode: Integrated workflow for robust mapping and visualizing whole human spatial proteome

Description

Peptide/exon/transcript centric or PTM enriched classification is applied to predict localization of them.

Usage

svmExternalData(df, modelA, modelB)

Arguments

df,	data frame fractionated additional data
modelA,	model for the replicate A classification
modelB,	model for the replicate B classification

Value

c.cls.df

Examples

{

df <- loadData(SubCellBarCode::hcc827Ctrl)

c.prots <- calculateCoveredProtein(rownames(df), markerProteins[,1])

set.seed(7)
c.prots <- sample(c.prots, 550)
cls <- svmClassification(c.prots, df, markerProteins)
modelA <- cls[[1]]$model
modelB <- cls[[2]]$model

exon.cls <- svmExternalData(SubCellBarCode::hcc827exon,
modelA = modelA, modelB = modelB)
}

SubCellBarCode documentation built on Nov. 8, 2020, 5:26 p.m.