mergeProbability: Merge compartment probabilities to neighborhood probabilities

In SubCellBarCode: SubCellBarCode: Integrated workflow for robust mapping and visualizing whole human spatial proteome

Description

Compartment levels classifications are summed up to associated neighborhood levels. It is a helper function.

Usage

mergeProbability(df)

Arguments

df	data.frame; all predictions at the neighborhood level and probablity vectors for each protein

Value

merged.df

Examples

{

#create mock data
df <- data.frame(Protein = "TP53",
S1 = as.numeric(0.02),
S2 = as.numeric(0.02),
S3 = as.numeric(0.02),
S4 = as.numeric(0.02),
N1 = as.numeric(0.72),
N2 = as.numeric(0.02),
N3 = as.numeric(0.02),
N4 = as.numeric(0.02),
C1 = as.numeric(0.02),
C2 = as.numeric(0.02),
C3 = as.numeric(0.02),
C4 = as.numeric(0.02),
C5 = as.numeric(0.02),
M1 = as.numeric(0.02),
M2 = as.numeric(0.02))

rownames(df) <- "TP53"

merged.df <- mergeProbability(df)

}

SubCellBarCode documentation built on Nov. 8, 2020, 5:26 p.m.