plotMultipleProtein: Visualization of multiple protein localizations
In SubCellBarCode: SubCellBarCode: Integrated workflow for robust mapping and visualizing whole human spatial proteome
Description
Usage
Arguments
Value
Examples
View source: R/plotMultipleProtein.R
Description
Distributions of subcellular localizations
of multiple proteins both ar the
compartment and neighborhood level are plotted.
Usage
1
plotMultipleProtein(sampleClassification, proteinList)
Arguments
sampleClassification
data.frame; merged classification,
combination of compartment and neighborhood classifications
per protein.
proteinList
vector; protein gene symbol names.
Value
multipleProt.df
Examples
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{
proteasome26s <- c("PSMA7", "PSMC3", "PSMB1", "PSMA1", "PSMA3","PSMA4",
"PSMA5", "PSMB4", "PSMB6", "PSMB5","PSMC2", "PSMC4", "PSMB3", "PSMB2",
"PSMD4", "PSMA6", "PSMC1", "PSMC5", "PSMC6", "PSMB7", "PSMD13")
exp.cls.df <- SubCellBarCode::hcc827GEFClass
multipleProt.df <- plotMultipleProtein(exp.cls.df, proteasome26s )
}
SubCellBarCode documentation built on Nov. 8, 2020, 5:26 p.m.
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Description Usage Arguments Value Examples
View source: R/plotMultipleProtein.R
Description
Distributions of subcellular localizations of multiple proteins both ar the compartment and neighborhood level are plotted.
Usage
1 | plotMultipleProtein(sampleClassification, proteinList)
|
Arguments
sampleClassification |
data.frame; merged classification, combination of compartment and neighborhood classifications per protein. |
proteinList |
vector; protein gene symbol names. |
Value
multipleProt.df
Examples
1 2 3 4 5 6 7 8 9 10 11 | {
proteasome26s <- c("PSMA7", "PSMC3", "PSMB1", "PSMA1", "PSMA3","PSMA4",
"PSMA5", "PSMB4", "PSMB6", "PSMB5","PSMC2", "PSMC4", "PSMB3", "PSMB2",
"PSMD4", "PSMA6", "PSMC1", "PSMC5", "PSMC6", "PSMB7", "PSMD13")
exp.cls.df <- SubCellBarCode::hcc827GEFClass
multipleProt.df <- plotMultipleProtein(exp.cls.df, proteasome26s )
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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