Files in SwathXtend

SWATH extended library generation and statistical data analysis

R/plotRelativeDensities.R R/parseAccession.R R/mlr.R R/plotRTCor.R R/libraryFormat.R R/plotRTResd.R R/selectModel.R R/proteinOverlap.R R/canonicalFormat.R R/mlrrep.R R/splitLib.R R/readLibFile.R R/convertAACount.R R/checkQuality.R R/openSwathFormat.R R/reliabilityCheckSwath.R R/outputLib.R R/alignRTbyHydro.R R/applyttest.R R/plotErrorBarsLines.R R/getRTrain.R R/consolidateAccession.R R/plotAll.R R/plotDensities.R R/computeRTCor.R R/mlrGroup.R R/fdrFunctions.R R/medianNorm.R R/plotStats.R R/applyttestPep.R R/computeRIICor.R R/reliabilityCheckLibray.R R/normalise.R R/buildSpectraLibPair.R R/isMissCleavaged.R R/cleanLib.R R/splitData.R R/plotRIICor.R R/predictRT.R man/plotRIICor.Rd man/reliabilityCheckSwath.Rd man/coverage.Rd man/ionCorGS.Rd man/plotRelativeDensities.Rd man/mlrrep.Rd man/applyttestPep.Rd man/plotAll.Rd man/quantification.accuracy.Rd man/mlrGroup.Rd man/fdr.crit.Rd man/plotErrorBarsLines.Rd man/getFdrBins.Rd man/buildSpectraLibPair.Rd man/readLibFile.Rd man/reliabilityCheckLibrary.Rd man/outputLib.Rd man/applyttest.Rd man/plotDensities.Rd man/canonicalFormat.Rd man/plotRTResd.Rd man/checkQuality.Rd man/swath.means.Rd man/cleanLib.Rd man/cv.Rd man/medianNorm.Rd man/plotRTCor.Rd man/mlr.Rd inst/doc/SwathXtend_vignette.pdf inst/doc/SwathXtend_vignette.R