annotate.stages: annotate.stages

In TRONCO: TRONCO, an R package for TRanslational ONCOlogy

Description

Annotate stage information on the selected dataset

Usage

annotate.stages(x, stages, match.TCGA.patients = FALSE)

Arguments

x	A TRONCO compliant dataset.
stages	A list of stages. Rownames must match samples list of x
match.TCGA.patients	Match using TCGA notations (only first 12 characters)

Value

A TRONCO compliant dataset.

Examples

data(test_dataset)
data(stage)
test_dataset = annotate.stages(test_dataset, stage)
as.stages(test_dataset)

TRONCO documentation built on Nov. 8, 2020, 5:51 p.m.