as.events: as.events

In TRONCO: TRONCO, an R package for TRanslational ONCOlogy

Description

Return all events involving certain genes and of a certain type in 'x', which should be a TRONCO compliant dataset - see is.compliant.

Usage

as.events(x, genes = NA, types = NA, keysToNames = FALSE)

Arguments

x	A TRONCO compliant dataset.
genes	The genes to consider, if NA all available genes are used.
types	The types of events to consider, if NA all available types are used.
keysToNames	If TRUE return a list of mnemonic name composed by type + gene

Value

A matrix with 2 columns (event type, gene name) for the events found.

Examples

data(test_dataset)
as.events(test_dataset)
as.events(test_dataset, types='ins_del')
as.events(test_dataset, genes = 'TET2')
as.events(test_dataset, types='Missing')

TRONCO documentation built on Nov. 8, 2020, 5:51 p.m.